Genomic and Evolutionary Analysis in COVID-19

Articles published in this theme: 14 (scroll down to load remaining articles)

2025

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Structural and Functional Impacts of SARS-CoV-2 Spike Protein Mutations: Insights From Predictive Modeling and Analytics

Edem K Netsey, Samuel M Naandam, Joseph Asante Jnr, Kuukua E Abraham, Aayire C Yadem, Gabriel Owusu, Jeffrey G Shaffer, Sudesh K Srivastav, Seydou Doumbia, Ellis Owusu-Dabo, Chris E Morkle, Desmond Yemeh, Stephen Manortey, Ernest Yankson, Mamadou Sangare, Samuel Kakraba

JMIR Bioinform Biotech 2025 (Dec 08); 6:e73637

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SARS-CoV-2 Detection in International Travelers Through Wastewater-Based Epidemiology at the Kigali International Airport: Genomic Surveillance Study

Rwagasore Edson, Robert Rutayisire, Ziad El-Khatib, Olivier Nsekuye, Hugues Valois Mucunguzi, Raissa Muvunyi, Esperance Umumararungu, Eric Remera

JMIR Public Health Surveill 2025 (Nov 27); 11:e71104

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Estimating Antigen Test Sensitivity via Target Distribution Balancing: Development and Validation Study

Miguel Bosch, Adriana Moreno, Raul Colmenares, Jose Arocha, Sina Hoche, Auris Garcia, Daniela Hall, Dawlyn Garcia, Lindsey Rudtner, Nol Salcedo, Irene Bosch

JMIR Bioinform Biotech 2025 (Oct 20); 6:e68476

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Patient-Related Metadata Reported in Sequencing Studies of SARS-CoV-2: Protocol for a Scoping Review and Bibliometric Analysis

Karen O'Connor, Davy Weissenbacher, Amir Elyaderani, Ebbing Lautenbach, Matthew Scotch, Graciela Gonzalez-Hernandez

JMIR Res Protoc 2025 (Apr 22); 14:e58567

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2023

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Effectiveness of Self-Collected, Ambient Temperature–Preserved Nasal Swabs Compared to Samples Collected by Trained Staff for Genotyping of Respiratory Viruses by Shotgun RNA Sequencing: Comparative Study

Raymond Soto, Litty Paul, Christina A Porucznik, Heng Xie, Rita Czako Stinnett, Benjamin Briggs, Matthew Biggerstaff, Joseph Stanford, Robert Schlaberg

JMIR Form Res 2023 (Nov 24); 7:e32848

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Mutations of SARS-CoV-2 Structural Proteins in the Alpha, Beta, Gamma, and Delta Variants: Bioinformatics Analysis

Saima Rehman Khetran, Roma Mustafa

JMIR Bioinform Biotech 2023 (Jul 14); 4:e43906

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SARS-CoV-2 Omicron Variant Genomic Sequences and Their Epidemiological Correlates Regarding the End of the Pandemic: In Silico Analysis

Ashutosh Kumar, Adil Asghar, Himanshu N Singh, Muneeb A Faiq, Sujeet Kumar, Ravi K Narayan, Gopichand Kumar, Prakhar Dwivedi, Chetan Sahni, Rakesh K Jha, Maheswari Kulandhasamy, Pranav Prasoon, Kishore Sesham, Kamla Kant, Sada N Pandey

JMIR Bioinform Biotech 2023 (Jan 10); 4:e42700

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2022

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Mutational Patterns Observed in SARS-CoV-2 Genomes Sampled From Successive Epochs Delimited by Major Public Health Events in Ontario, Canada: Genomic Surveillance Study

David Chen, Gurjit S Randhawa, Maximillian PM Soltysiak, Camila PE de Souza, Lila Kari, Shiva M Singh, Kathleen A Hill

JMIR Bioinform Biotech 2022 (Dec 22); 3(1):e42243

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Development of a Multiepitope Vaccine Against SARS-CoV-2: Immunoinformatics Study

Fatemeh Ghafouri, Reza Ahangari Cohan, Hilda Samimi, Ali Hosseini Rad S M, Mahmood Naderi, Farshid Noorbakhsh, Vahid Haghpanah

JMIR Bioinform Biotech 2022 (Jul 19); 3(1):e36100

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In Silico Comparative Analysis of the Functional, Structural, and Evolutionary Properties of SARS-CoV-2 Variant Spike Proteins

Renukaradhya K Math, Nayana Mudennavar, Palaksha Kanive Javaregowda, Ambuja Savanur

JMIR Bioinform Biotech 2022 (May 30); 3(1):e37391

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Identification of Potential Vaccine Candidates Against SARS-CoV-2 to Fight COVID-19: Reverse Vaccinology Approach

Ekta Gupta, Rupesh Kumar Mishra, Ravi Ranjan Kumar Niraj

JMIR Bioinform Biotech 2022 (Apr 26); 3(1):e32401

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2021

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Isolating SARS-CoV-2 Strains From Countries in the Same Meridian: Genome Evolutionary Analysis

Emilio Mastriani, Alexey V Rakov, Shu-Lin Liu

JMIR Bioinform Biotech 2021 (Jan 22); 2(1):e25995

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2020

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The Novel Coronavirus Enigma: Phylogeny and Analyses of Coevolving Mutations Among the SARS-CoV-2 Viruses Circulating in India

Anindita Banerjee, Rakesh Sarkar, Suvrotoa Mitra, Mahadeb Lo, Shanta Dutta, Mamta Chawla-Sarkar

JMIR Bioinform Biotech 2020 (Sep 07); 1(1):e20735

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Structural Basis for Designing Multiepitope Vaccines Against COVID-19 Infection: In Silico Vaccine Design and Validation

Sukrit Srivastava, Sonia Verma, Mohit Kamthania, Rupinder Kaur, Ruchi Kiran Badyal, Ajay Kumar Saxena, Ho-Joon Shin, Michael Kolbe, Kailash C Pandey

JMIR Bioinform Biotech 2020 (Jun 19); 1(1):e19371

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