Genome Analysis and Visualization

Secure Comparisons of Single Nucleotide Polymorphisms Using Secure Multiparty Computation: Method Development

Andrew Woods, Skyler T Kramer, Dong Xu, Wei Jiang

JMIR Bioinform Biotech 2023 (Jul 18); 4:e44700

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Genomic Insights Into the Evolution and Demographic History of the SARS-CoV-2 Omicron Variant: Population Genomics Approach

Kritika M Garg, Vinita Lamba, Balaji Chattopadhyay

JMIR Bioinform Biotech 2023 (Jun 12); 4:e40673

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Decision of the Optimal Rank of a Nonnegative Matrix Factorization Model for Gene Expression Data Sets Utilizing the Unit Invariant Knee Method: Development and Evaluation of the Elbow Method for Rank Selection

Emine Guven

JMIR Bioinform Biotech 2023 (Jun 06); 4:e43665

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The Differentially Expressed Genes Responsible for the Development of T Helper 9 Cells From T Helper 2 Cells in Various Disease States: Immuno-Interactomics Study

Manoj Khokhar, Purvi Purohit, Ashita Gadwal, Sojit Tomo, Nitin Kumar Bajpai, Ravindra Shukla

JMIR Bioinform Biotech 2023 (Feb 23); 4:e42421

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Prediction of Antibody-Antigen Binding via Machine Learning: Development of Data Sets and Evaluation of Methods

Chao Ye, Wenxing Hu, Bruno Gaeta

JMIR Bioinform Biotech 2022 (Oct 28); 3(1):e29404

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A Bioinformatics Tool for Predicting Future COVID-19 Waves Based on a Retrospective Analysis of the Second Wave in India: Model Development Study

Ashutosh Kumar, Adil Asghar, Prakhar Dwivedi, Gopichand Kumar, Ravi K Narayan, Rakesh K Jha, Rakesh Parashar, Chetan Sahni, Sada N Pandey

JMIR Bioinform Biotech 2022 (Sep 22); 3(1):e36860

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Diagnosis of a Single-Nucleotide Variant in Whole-Exome Sequencing Data for Patients With Inherited Diseases: Machine Learning Study Using Artificial Intelligence Variant Prioritization

Yu-Shan Huang, Ching Hsu, Yu-Chang Chune, I-Cheng Liao, Hsin Wang, Yi-Lin Lin, Wuh-Liang Hwu, Ni-Chung Lee, Feipei Lai

JMIR Bioinform Biotech 2022 (Sep 15); 3(1):e37701

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Identification of a Novel c.3080delC JAG1 Gene Mutation Associated With Alagille Syndrome: Whole Exome Sequencing

Deepak Panwar, Vandana Lal, Atul Thatai

JMIR Bioinform Biotech 2022 (Jul 08); 3(1):e33946

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Differential Expression of Long Noncoding RNAs in Murine Myoblasts After Short Hairpin RNA-Mediated Dysferlin Silencing In Vitro: Microarray Profiling

Richa Singhal, Rachel Lukose, Gwenyth Carr, Afsoon Moktar, Ana Lucia Gonzales-Urday, Eric C Rouchka, Bathri N Vajravelu

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e33186

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An Analysis of Different Distance-Linkage Methods for Clustering Gene Expression Data and Observing Pleiotropy: Empirical Study

Joydhriti Choudhury, Faisal Bin Ashraf

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e30890

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The Easy-to-Use SARS-CoV-2 Assembler for Genome Sequencing: Development Study

Martina Rueca, Emanuela Giombini, Francesco Messina, Barbara Bartolini, Antonino Di Caro, Maria Rosaria Capobianchi, Cesare EM Gruber

JMIR Bioinform Biotech 2022 (Mar 14); 3(1):e31536

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A Biomedical Knowledge Graph System to Propose Mechanistic Hypotheses for Real-World Environmental Health Observations: Cohort Study and Informatics Application

Karamarie Fecho, Chris Bizon, Frederick Miller, Shepherd Schurman, Charles Schmitt, William Xue, Kenneth Morton, Patrick Wang, Alexander Tropsha

JMIR Med Inform 2021 (Jul 20); 9(7):e26714

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CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study

Boxiang Liu, Kaibo Liu, He Zhang, Liang Zhang, Yuchen Bian, Liang Huang

J Med Internet Res 2020 (Oct 02); 22(10):e22299

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