Bioinformatics, genomics, tools and databases

The Challenges and Lessons Learned Building a New UK Infrastructure for Finding and Accessing Population-Wide COVID-19 Data for Research and Public Health Analysis: The CO-CONNECT Project

Emily Jefferson, Gordon Milligan, Jenny Johnston, Shahzad Mumtaz, Christian Cole, Joseph Best, Thomas Charles Giles, Samuel Cox, Erum Masood, Scott Horban, Esmond Urwin, Jillian Beggs, Antony Chuter, Gerry Reilly, Andrew Morris, David Seymour, Susan Hopkins, Aziz Sheikh, Philip Quinlan

J Med Internet Res 2024 (Nov 20); 26:e50235

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Exploring the Intersection of Schizophrenia, Machine Learning, and Genomics: Scoping Review

Alexandre Hudon, Mélissa Beaudoin, Kingsada Phraxayavong, Stéphane Potvin, Alexandre Dumais

JMIR Bioinform Biotech 2024 (Nov 15); 5:e62752

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Methodology for Biological Sample Collection, Processing, and Storage in the Newcastle 1000 Pregnancy Cohort: Protocol for a Longitudinal, Prospective Population-Based Study in Australia

Joshua J Fisher, Tegan Grace, Nathan A Castles, Elizabeth A Jones, Sarah J Delforce, Alexandra E Peters, Gabrielle K Crombie, Emily C Hoedt, Kirby E Warren, Richard GS Kahl, Jonathan J Hirst, Kirsty G Pringle, Craig E Pennell

JMIR Res Protoc 2024 (Nov 15); 13:e63562

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Twenty-Five Years of AI in Neurology: The Journey of Predictive Medicine and Biological Breakthroughs

Barak Gutman, Amit-Haim Shmilovitch, Dvir Aran, Shahar Shelly

JMIR Neurotech 2024 (Nov 08); 3:e59556

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It Is in Our DNA: Bringing Electronic Health Records and Genomic Data Together for Precision Medicine

Alan J Robertson, Andrew J Mallett, Zornitza Stark, Clair Sullivan

JMIR Bioinform Biotech 2024 (Jun 13); 5:e55632

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Assessing Privacy Vulnerabilities in Genetic Data Sets: Scoping Review

Mara Thomas, Nuria Mackes, Asad Preuss-Dodhy, Thomas Wieland, Markus Bundschus

JMIR Bioinform Biotech 2024 (May 27); 5:e54332

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The Roles of NOTCH3 p.R544C and Thrombophilia Genes in Vietnamese Patients With Ischemic Stroke: Study Involving a Hierarchical Cluster Analysis

Huong Thi Thu Bui, Quỳnh Nguyễn Thị Phương, Ho Cam Tu, Sinh Nguyen Phuong, Thuy Thi Pham, Thu Vu, Huyen Nguyen Thi Thu, Lam Khanh Ho, Dung Nguyen Tien

JMIR Bioinform Biotech 2024 (May 07); 5:e56884

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Machine Learning Models for Prediction of Maternal Hemorrhage and Transfusion: Model Development Study

Homa Khorrami Ahmadzia, Alexa C Dzienny, Mike Bopf, Jaclyn M Phillips, Jerome Jeffrey Federspiel, Richard Amdur, Madeline Murguia Rice, Laritza Rodriguez

JMIR Bioinform Biotech 2024 (Feb 05); 5:e52059

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Treatment Discontinuation Prediction in Patients With Diabetes Using a Ranking Model: Machine Learning Model Development

Hisashi Kurasawa, Kayo Waki, Akihiro Chiba, Tomohisa Seki, Katsuyoshi Hayashi, Akinori Fujino, Tsuneyuki Haga, Takashi Noguchi, Kazuhiko Ohe

JMIR Bioinform Biotech 2022 (Sep 23); 3(1):e37951

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Reducing Crowding in Emergency Departments With Early Prediction of Hospital Admission of Adult Patients Using Biomarkers Collected at Triage: Retrospective Cohort Study

Ann Corneille Monahan, Sue S Feldman, Tony P Fitzgerald

JMIR Bioinform Biotech 2022 (Sep 13); 3(1):e38845

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The Application of Machine Learning in Predicting Mortality Risk in Patients With Severe Femoral Neck Fractures: Prediction Model Development Study

Lingxiao Xu, Jun Liu, Chunxia Han, Zisheng Ai

JMIR Bioinform Biotech 2022 (Aug 19); 3(1):e38226

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Monitoring Physical Behavior in Rehabilitation Using a Machine Learning–Based Algorithm for Thigh-Mounted Accelerometers: Development and Validation Study

Frederik Skovbjerg, Helene Honoré, Inger Mechlenburg, Matthijs Lipperts, Rikke Gade, Erhard Trillingsgaard Næss-Schmidt

JMIR Bioinform Biotech 2022 (Jul 26); 3(1):e38512

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Differential Expression of Long Noncoding RNAs in Murine Myoblasts After Short Hairpin RNA-Mediated Dysferlin Silencing In Vitro: Microarray Profiling

Richa Singhal, Rachel Lukose, Gwenyth Carr, Afsoon Moktar, Ana Lucia Gonzales-Urday, Eric C Rouchka, Bathri N Vajravelu

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e33186

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An Analysis of Different Distance-Linkage Methods for Clustering Gene Expression Data and Observing Pleiotropy: Empirical Study

Joydhriti Choudhury, Faisal Bin Ashraf

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e30890

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In Silico Comparative Analysis of the Functional, Structural, and Evolutionary Properties of SARS-CoV-2 Variant Spike Proteins

Renukaradhya K Math, Nayana Mudennavar, Palaksha Kanive Javaregowda, Ambuja Savanur

JMIR Bioinform Biotech 2022 (May 30); 3(1):e37391

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Novel Molecular Networks and Regulatory MicroRNAs in Type 2 Diabetes Mellitus: Multiomics Integration and Interactomics Study

Manoj Khokhar, Dipayan Roy, Sojit Tomo, Ashita Gadwal, Praveen Sharma, Purvi Purohit

JMIR Bioinform Biotech 2022 (Feb 23); 3(1):e32437

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Participant-Partners in Genetic Research: An Exome Study with Families of Children with Unexplained Medical Conditions

Sara Huston Katsanis, Mollie A Minear, Azita Sadeghpour, Heidi Cope, Yezmin Perilla, Robert Cook-Deegan, Duke Task Force For Neonatal Genomics, Nicholas Katsanis, Erica E Davis, Misha Angrist

J Particip Med 2018 (Jan 30); 10(1):e2

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